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Published on
September 29, 2023

Gut Bacteria: Orchestrating an Uplifting Gut-Brain Symphony

Gut bacteria and gut-brain connection

Discovering Gut Bacteria's Role

In this article, we delve into the captivating link between the gut bacteria and the brain.

This exploration uncovers the hidden influences of neurotransmitters and microbes, shedding light on how they shape our health and emotions.

Welcome to a world where gut feelings take center stage.

Key Takeaways


  • The communication between the brain, gut, and gut-to-brain pathways is increasingly recognized as crucial, with neurotransmitter 5-HT (serotonin) playing a significant role in this communication.
  • Specific bacteria in the human and mouse gut can influence 5-HT levels in the gut and bloodstream, impacting gut-related disorders.
  • Some psychotropic drugs, like SSRIs, can affect gut bacteria, suggesting a bidirectional influence between medication and the gut microbiota.
  • Gut bacteria have been found to influence the development and proper functioning of the adult nervous system through 5-HT4 receptors.
  • The gut microbiota can affect brain function by altering the levels of tryptophan, which is involved in serotonin production.
  • Dysbiosis (imbalanced gut bacteria) may be associated with Irritable Bowel Syndrome (IBS) symptoms, but the exact relationship is still not fully understood.
  • There is evidence suggesting a link between gut microbiota composition and mental health, particularly in cases of Major Depressive Disorder (MDD).
  • Probiotics and dietary changes have shown potential benefits in managing IBS and mood disorders, but more research is needed to establish their effectiveness.
  • Fecal microbiota transplantation (FMT) has shown promise in altering gut bacteria and improving IBS symptoms in some cases, but results can vary.
  • The Microbiome-Gut-Brain (MGB) axis is an area of active research, revealing strong connections between gut health and brain function.
  • Gender differences may exist in how gut bacteria affect brain development and susceptibility to stress-related disorders.
gut bacteria-gut microbiota

Mechanisms of Gut Microbiota to Gut-Brain Signaling


The Vagus Nerve: A Key Player in the Gut-Brain Axis

The vagus nerve is like a two-way highway between the brain and the gut. Scientists have done a lot of research on how this connection affects our health.

Although the sensory vagus nerve and digestive system are very connected, we still don’t understand all the details of how they work together. 1

The afferent branch of the vagus nerve is the main nerve connection between the gut and the brain that helps regulate emotions.

Although it does not directly interact with the gut microbiome, research suggests the vagus nerve can sense signals from bacteria and their metabolites 2 and can be affected by the way bacteria interact with cells in the gut 3

For instance, bacteria produce fatty acids like butyrate, propionate, acetate, and valerate which can alter the way the gut works, such as how it moves, secretes, and reacts to inflammation.4

Studies in mice suggest that the vagus nerve (which connects the brain to the gut) could be involved in how mood and behavior are linked to the gut microbiome.

For example, when mice had their vagus nerve cut, it blocked the brain’s communication with certain bacteria in their gut, such as Lactobacillus and Bifidobacterium, which are important for controlling mood 5 6

Recent research suggests that a two-way link exists between the gut microbiome, diet, and the vagus nerve, which could help explain how our mental health is linked to our gut.

When dietary tryptophan is increased, certain microbes make ECCs (Epithelial Cells of the Colon) more active 7

ECCs also connect with nerves through special neuropod-like extensions 8

The Autonomic Nervous System (ANS) can also make ECCs release serotonin into the gut, which gets taken up by special transporters and affects bacteria in the gut 9

Enterochromaffin cells (ECCs) are a type of cell found in the digestive system that contains more than 90% of the body’s serotonin (5-HT).

These cells can be activated by chemicals like short-chain fatty acids (SCFAs) and bile acids (2BAs) produced by certain bacteria in the gut. Eating more foods that contain the amino acid tryptophan can also increase the stimulatory effects of these ECCs, as it makes more of these chemicals available 10

ECCs also communicate with nerve endings in the gut by forming synaptic connections to them.

ECCs (enterochromaffin cells) can talk to different nerve cells by making connections with them.

The ANS (autonomic nervous system) can also make ECCs release 5-HT (a chemical) into the gut, which can be taken in by special molecules and impact the bacteria in the gut.

HIGHLIGHT

The Vagus Nerve’s intricate connection to the gut, emotions, and microbiome, alongside ECCs’ impact on gut-brain communication and bacteria.

The Crucial Role of Immunity in Gut-Brain Communication

Sensors and Signaling: Toll-like Receptors and Peptidoglycans in Immune Response

Immunity plays a vital role in connecting the gut microbiota, the ENS (Enteric Nervous System), and the brain. There are two types of sensors, Toll-like receptors (TLRs) and peptidoglycans (PGNs), which help the immune system to respond to microbes 11 12 . A healthy gut barrier stops the wrong activation of immune cells and the growth of systemic immune activation.

Gut Bacteria’s Impact on Brain Health: Immune Agonists, TLRs, and Neurological Diseases

Bacteria can release molecules called immune agonists such as lipopolysaccharide (LPS) and PGN, which can travel to the brain and interact with receptors called TLRs.

Scientists think that these TLRs play a role in diseases such as Alzheimer’s Disease 13 , Parkinson’s Disease 14, pain 15, ,and depression 16

When mice are given antibiotics or special diets, the expression of certain receptors that detect PGN in the brain is reduced, suggesting that the bacteria in the gut can affect the brain.

Behavioral Consequences: Gut-Microbiota Interaction and Behavior Changes

It has been shown that altering the ability of mice to sense a particular type of bacteria (called peptidoglycan) can lead to changes in their behavior 17

This suggests that the way that our bodies interact with bacteria can have important consequences for our behavior.

Diet can also affect the types of bacteria in our gut, which can lead to changes in the protective layer that stops bacteria from reaching cells in our body. This could result in our bodies reacting to both helpful and harmful bacteria.

Nutrition’s Role in Immune Activation and Brain Health

The food we eat can cause our bodies to release chemicals that activate our immune systems 18

This low level of immune system activation can affect different parts of our body, including our brain, and has been linked to depression and diseases like Alzheimer’s and Parkinson’s.

HIGHLIGHT

Immunity’s role in connecting the gut, ENS, and brain, involves sensors like TLRs and PGNs.

The Impact of Antibiotics and Gut Bacteria on Neural and Immune Systems

TLR4 and TLR2: Key Players in Antibiotic-Induced Gut Changes

It has been suggested that the effects of germ-free and antibiotic-treated mice, such as decreased numbers of nitrergic neurons and reduced motility, may be caused by TLR4 and/or TLR2.

TLR2-deficient mice have also been shown to have issues in the way their neurons code the ENS, resulting in gut dysmotility and reduced chloride production in intestine explants 19

Antibiotic use can change the amount of bacteria in the body, which can affect how our body responds to certain things.

This can lead to changes in the way our digestive system works, and how it reacts to a chemical called acetylcholine 20

It looks like these changes might be caused, at least in part, by two things called TLR4 and TLR2.

Macrophages and Gut Bacteria: Collaborative Defense of the Digestive System

Macrophages are special cells that are found all over the gut 21. They help the body repair itself after injury.

Studies have found that when people or animals are given antibiotics or don’t have any bacteria living in their bodies (germ-free or GF mice), the number of macrophages found in the gut goes down
22

This suggests that the bacteria in our bodies have a role in helping to recruit and create macrophages.

Studies have shown that the bacteria in the gut can interact with the brain and the immune system to protect the digestive system.

For example, when a person is infected with Salmonella Typhimurium, the nerve cells in the digestive system can be activated by the bacteria and then the macrophages (a type of white blood cell) can be stimulated to help protect the nervous system and improve gut movement 23

The digestive system can also protect itself from Salmonella by producing a substance called IL-18, which helps to keep the mucous membrane barrier strong and makes it harder for bacteria to enter
24

Finally, research has shown that the bacteria in the gut can influence messages sent from the brain to other parts of the body, such as the nervous system 25

HIGHLIGHT

Antibiotics and germ-free conditions alter gut function through TLR4 and TLR2, while gut bacteria influence macrophage presence and protect the digestive system against infections, impacting gut-brain communication.

The Impact of Gut Bacteria on Brain Function and Communication

Neurotransmitters and Gut Bacteria

The bacteria in our gut produce chemicals that can change the way our brains and nerves work.

These chemicals, called neurotransmitters, have been shown to exist in some bacteria in laboratory tests 26 27

But it’s not yet known if these neurotransmitters can get to the parts of the brain they need to, or if there are enough of them to make a difference.

Most neurotransmitters have a short lifespan and can’t easily get through something called the blood-brain barrier, which makes it unlikely that they would be able to do much.

Serotonin and Tryptophan Metabolites

Research shows that serotonin and other tryptophan metabolites play a crucial role in gut-brain communication, affecting various aspects such as gastrointestinal motility, mood, and behavior 28 29 30

Recent research has highlighted the pivotal role of serotonin (5-HT) in communication between the gut and brain.

Certain bacteria can increase serotonin levels in the gut and bloodstream, potentially alleviating gut-related disorders 31

This is because these bacteria produce a substance called SCFAs, which increases the production of 5-HT by turning on Tph1 in certain cells

Furthermore, the Turicibacter sanguinis bacterium, which can take up serotonin, is important for its colonization in the gut and its influence on the human body 32

Short-Chain Fatty Acids

Gut bacteria produce substances called SCFA metabolites that can affect different parts of the body, such as the gut, brain, and immune system.

These metabolites act through FFARs on cells like epithelial cells, EECs, ECCs, immune cells, and neurons to help regulate things like movement, secretion, and communication between the gut and brain.

For example, research has found that giving acetate, propionate, and butyrate can help restore the normal shape of microglia in the brain of germ-free mice and reduce the negative consequences of stress 33 34

SCFAs may also affect the production of chemicals in the brain that help control emotion and behavior, like noradrenaline and dopamine, by changing the activity of enzymes involved in their creation 35

Further research is needed to find out how much of the short-lived substances called SCFAs can actually reach the brain since they only last from 25 minutes to three hours.

Studies that look at the influence of SCFAs on brain activity and behavior have usually used levels of SCFAs that are much higher than what is produced by microbes 36

Influence of Psychotropic Drugs on Gut Microbiota

Some psychotropic drugs, including SSRIs, can have an effect on the bacteria that live in the gut.

This effect, known as the intestinal microbiota, could explain why some of these drugs can have a back-and-forth influence on the body. 37

Research has also shown that the bacteria in our gut can help the adult nervous system develop and work properly.

This happens when the bacteria activate something called 5-HT4 receptors and this helps to make sure that the nervous system is working correctly.

Lastly, the bacteria in our gut can also affect how our brain works by changing the amount of a chemical called tryptophan, which is involved in the production of serotonin, a chemical that helps our brain stay balanced.

Tryptophan Metabolism Beyond Serotonin

Male GF mice have significantly more tryptophan in their bodies than normal mice [56], and this leads to higher levels of serotonin and its byproduct, 5-hydroxy-indole acetic acid [56], in their brains. 38

It is not yet known if this affects the social skills of these mice, and more research is needed to find out.

In a study with rodents, a reduction in Lactobacilli caused by chronic stress led to an increase in the conversion of tryptophan to kynurenine 39

This can have a negative effect on the brain, causing inflammation and damage 40

Indole: Gut-Brain Communication Molecule

The production of indole, which is mainly found in the gut, is caused by an enzyme called tryptophan hydroxylase.

It has been discovered that indole is present in the blood, brain, and stomach.

Scientists have been exploring how indole, which is made from tryptophan in the gut, could affect the communication between the gut and the brain 41

Indoles have lots of positive effects on how the intestines and body work together to stay healthy 42

But some indoles can have bad effects on the connection between the gut and the brain, which has been seen to cause depression-like behavior in tests with animals 43

Tryptamine: Gut-Bacteria-Produced Molecule

Recent studies have shown that bacteria in our gut can produce a molecule called tryptamine that can affect the movement of food through our digestive system 44

This suggests that bacteria in our gut are capable of producing molecules that affect how our bodies work.

It’s not yet clear if these molecules can get into the brain and change our behavior 45 46

HIGHLIGHT

Gut bacteria produce neurotransmitters and compounds like serotonin and SCFAs, influencing brain function and gut-brain communication, but their reach and effects on behavior remain uncertain.

Probiotics and Emotional Brain Power: Unveiling the Gut-Brain Connection


Gut bacteria-microbiota-brain-axis

Research has shown that taking probiotics for four weeks can change the way our brain recognizes emotions 47

Four weeks of probiotic consumption by healthy females caused changes to the way the brain recognizes emotions 48

Another study with female participants found that different types of bacteria affected the brain structures related to emotions, attention, and how a person senses 49

In further research, it was seen that giving healthy males a supplement of Lactobacillus rhamnosus (JB-1) had different effects on their stress levels, with some showing a positive effect 50, and others showing no effect. 51

In a different study, probiotics were found to enhance emotional decision-making and mood in healthy people when compared to a placebo 52

However, there is still no strong proof that probiotics can change a person’s behavior, as results from research on probiotic consumption in small groups of people have been conflicting 53 54 55

HIGHLIGHT

Probiotics can impact brain responses to emotions in both men and women, affecting stress levels and emotional decision-making, but their influence on behavior remains inconclusive in small-scale studies.

Disorders of Brain-Gut Interactions: IBS


The Intricate Relationship between IBS and Anxiety

IBS is a very common problem that affects up to 4.8% of people around the world 56

It happens when the brain and the digestive system don’t work together well.

People with IBS feel pain in their stomachs and have changes to their digestion 57 , even if there is nothing wrong with their body.

It has been found that up to 50% of people who have an anxiety disorder also have IBS, and people with IBS are more than three times as likely to have an anxiety disorder 58

59

Many IBS patients experienced difficult events or stressful situations in childhood or adulthood 60, but for some IBS starts after an event in the intestines. 61

A study was done to look at people with anxiety/depression and IBS and people with neither condition, and it showed how the brain and gut work together.

It has been concluded from the study that people who have higher levels of anxiety and depression at the start are more likely to develop IBS.

On the other hand, those who have IBS at the beginning show higher levels of anxiety or depression.

Surprisingly, in two out of three situations, the diagnosis of IBS came first, suggesting that in some people, having a problem with their stomach can be the cause of a mood disorder 62

The Brain’s Role in Stomach Pain: Insights from fMRI Scans

Changes in the way the brain works, as seen on an fMRI scan, may be related to stomach pain 63

Scientists have discovered that parts of the brain that help control anxiety and how the body deals with things, like the amygdala, are linked to how sensitive the colon is and how well the intestines move.

Research has found links between brain networks that can cause anxiety, like the amygdala, and parts of the body that are related to digestion, such as the colon and intestines.

Scientists have also noticed changes in pain signals in the brain when it comes to feeling emotions and dealing with digestive issues . 64 65

This suggests that a similar process in rodents, which involves a stress hormone called corticotropin-releasing factor, may be involved in how the brain and gut are connected 66

IBS and the Enigmatic Microbiome Connection

It is yet to be found out if the changes in the gut microbiota are responsible for IBS symptoms 67

Recent findings suggest that some IBS patients have similar gut microbial communities to healthy individuals, despite experiencing gastrointestinal symptoms, despite previous studies reporting different fecal microbial compositions in IBS patients based on factors such as age, type of IBS, and compartment. 68

Moreover, one research study showed that a dysbiotic IBS subgroup had different brain volumes than a group with regular gut microbiota, which could demonstrate a connection between the microbial community structure and the brain structure.

Although people with IBS and healthy controls had the same type of microbiota, meaning that the bacteria in their gut were the same, it is unclear if dysbiosis (unbalance of bacteria in the gut) is the cause of IBS symptoms.

Studies have been done that found that the severity of IBS symptoms does appear to be related to dysbiosis 69

More recently, research was done that showed that people with different types of IBS had different types of bacteria in their gut.

A recent study showed that people with different types of IBS had different amounts of “Clostridiales” in their digestive systems.

This was linked to different levels of “fecal SCFAs” and “fecal cytokine levels” 70

To understand how these things are connected, more research is needed that looks at people without IBS and with a bigger sample size.

The Multifaceted Factors Influencing the IBS Microbiota

The findings from studies on the IBS microbiota can be attributed to the various technologies used to study the microbiota, the source of the sample, the different types of IBS, the effect of the autonomic nervous system on other aspects of the body (e.g. mucus production, intestinal permeability and mucosal immunity) . 71

As well as other factors that can influence microbial composition and function (e.g. age, diet, antibiotic exposure, geography, probiotic intake, medication use) 72

This is further complicated by the need to take into account the effect of the brain and nervous system on gut physiology and motility, such as sleep quality and stress.

Unveiling the Serotonin Puzzle: A Key to Understanding IBS

It appears that alterations in enteric mucosal and blood serotonin signaling have been observed in both adults and children who have Irritable Bowel Syndrome (IBS).

This could be an indicator of a disruption in the communication between the gut and the brain. Serotonin is a chemical that can activate more than 15 different receptors and subtypes in the brain and in the intestine.

A lot of the research into IBS has focused on two of these receptors called the 5-HT3 and 5-HT4 receptors, as they have been linked to mood, motility, and abdominal pain. 73 74

HIGHLIGHT

IBS is a common condition affecting digestion and is often linked to anxiety. The gut microbiome’s role is unclear, but stress and serotonin signaling disruptions are associated with IBS. Brain-gut interactions play a key role in the condition’s complexity.


In recent years, there have been a lot of studies showing that people with Major Depressive Disorder (MDD) have a different makeup of bacteria in their gut compared to people who are healthy 75

This difference in results is likely because of the same things that cause Irritable Bowel Syndrome.

The findings of studies suggest that the same reasons that cause irritable bowel syndrome (IBS) may also be responsible for different outcomes in mental health.

It has been observed that when the microbiome of a depressed person is transferred to a healthy mouse, it can produce symptoms of depression in the mouse, suggesting that the microbiome may play an important role in the development of depression.

This opens up the concept that targeting the microbiome might help improve mental health 76

HIGHLIGHT

Recent research links Major Depressive Disorder to distinct gut bacteria, akin to Irritable Bowel Syndrome, suggesting the gut microbiome’s potential influence on mental health.

Mood and IBS: Targeting the MGB Axis


Dietary Interventions for IBS and Mental Well-being

Research has found that when adults with IBS-D follow a low FODMAP diet, their symptoms, quality of life, anxiety, and activity levels improve 77

However, this diet may not be suitable for long-term use, as it could reduce the diversity and abundance of the gut microbiome, as well as be difficult to maintain for a long period of time.

Nutritional Psychiatry is a different way of treating depression. Studies have shown that eating a mostly plant-based diet, such as the traditional Mediterranean diet, can help with depression 78

Scientists do not yet know exactly how food affects our moods or which ingredients are the most helpful, but they are working on finding out.

Supplementing the Gut Microbiome: The Probiotic Dilemma

Probiotics have been tried as an alternate treatment to help with mental health, but so far, there is no proof that they actually work 79

Research has shown that taking probiotics, such as types of Bifidobacterium and Lactobacillus, or VSL#3, can help reduce the symptoms of IBS for both adults and children 80 81 82

The recently published AGA Guidelines on probiotics do not recommend their use in IBS, due to the fact that the quality of the studies is not good enough, other than in controlled studies.

Probiotic supplements can alter the gut microbiota in humans, but the extent of the changes varies.

Advanced technologies like metagenomics or metabolomics should be utilized to accurately evaluate the impact of probiotic interventions on gut microbial profiles.

Fecal Microbiome Transplantation (FMT) in IBS and Mood Disorders

Research into fecal microbiota transplantation (FMT) is still limited, and no clear benefit has been found when looking at the results of studies as a whole 83

Two recent studies that compared FMT to other treatments found changes in the gut microbiome of those who had the FMT.

Two recent studies have shown changes in the bacteria in the guts of people who received an FMT (a type of medical treatment).

In one study, those receiving the FMT reported a significant reduction in IBS symptoms three months later.

However, in the other study, those who received a placebo (a type of dummy treatment) reported greater improvement in their symptoms. Scientists are currently working on more detailed studies to see if FMT could help with depression. 84

HIGHLIGHT

A low FODMAP diet aids IBS-D symptoms but isn’t long-term friendly. Plant-based diets show promise for depression. Probiotics’ mental health effects remain inconclusive. FMT research yields mixed results; potential for IBS, exploring depression.

Shaping the Future of Medicine: Microbiome Insights into Brain Disorders


Gut bacteria-microbiota-brain-axis

Significant advancements have been made in comprehending the MGB axis in preclinical models of human brain disorders, and in exploring the potential translation of these discoveries into clinical applications.

Research has established that brain-gut interaction disorders such as IBS have a strong neurological component and that numerous brain disorders have gastrointestinal implications, or may even originate from the gut.

Although the causal relationship between the gut microbiome and these interactions is yet to be established, this valuable knowledge will undoubtedly shape the development of interdisciplinary therapeutic approaches for years to come.

The microbiome (the collection of bacteria living in our bodies) can have a different effect on brain development in males and females.

Girls are more likely to suffer from stress-related and functional GI disorders 85 86 , while animal studies suggest that boys are more vulnerable to problems with the microbiome early on in life 87

Recent studies have found that male brains seem to be more sensitive to changes in the bacteria living in their gut compared to female brains.

This has led to scientists wanting to learn more about how these changes affect different genders 88

However, there has been no research into how race might impact the bacteria in our gut and its effects on the brain 89

Investigations are currently being done to develop live biotherapeutics, which are bacteria-made substances that have positive impacts on the brain. This field is still in its early stages.

To treat conditions such as irritable bowel syndrome (IBS) and other disorders that involve interactions between the gut and the brain, the best treatments involve a combination of personalized diet plans, behavioral therapies, and a few medications that can help improve digestive function 90

There are pathways connecting the gut and the brain, and understanding them can help us treat these conditions better.

HIGHLIGHT

Recent research reveals a strong link between the gut and brain, especially in disorders like IBS. Gender differences in microbiome impact are being explored, while live biotherapeutics show promise. Understanding gut-brain connections informs effective treatments.

Discussion


The information provided underscores the intricate relationship between the gut, brain, and overall health.

The gut-brain connection is mediated by neurotransmitters like serotonin, which are influenced by specific bacteria in the gut.

This connection has implications for various conditions, including IBS and mood disorders.

Psychotropic medications, like SSRIs, may not only affect brain function but also have a bidirectional impact on gut bacteria.

The gut microbiota plays a role in the development and functioning of the nervous system through 5-HT4 receptors, shedding light on the importance of gut health for overall well-being.

The gut microbiota’s potential role in mental health is a topic of significant interest. Studies suggest that differences in gut bacteria composition may contribute to conditions like Major Depressive Disorder.

Probiotics and dietary changes have shown some promise in managing both gut and mood disorders, but further research is necessary to confirm their effectiveness.

Fecal microbiota transplantation (FMT) is being explored as a potential treatment for altering gut bacteria and improving symptoms in conditions like IBS. However, its efficacy is still a subject of ongoing research.

The Microbiome-Gut-Brain (MGB) axis is a complex system that connects gut health with brain function. Understanding this axis can lead to innovative interdisciplinary therapies.

Conclusion


The gut-brain connection, mediated by neurotransmitters like serotonin and influenced by specific gut bacteria, is a critical aspect of overall health.

It has implications for conditions like IBS and mood disorders, highlighting the importance of maintaining a healthy gut microbiota.

Further research is needed to better understand the exact mechanisms and to develop effective treatments that harness the potential of the gut-brain axis for improved well-being.

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